ChangeLog 1.11 MB
Newer Older
Guillaume Lazzara's avatar
Guillaume Lazzara committed
1
2
3
4
5
6
7
8
9
10
11
12
13
2009-03-03  Guillaume Lazzara  <lazzara@lrde.epita.fr>

	Small fixes (again).

	* mln/level/approx/median.hh: call diameter() instead of length() on
	win::ball.

	* mln/level/convert.hh: fix a return type.

	* mln/morpho/closing/essential.hh,
	* mln/morpho/essential.hh,
	* mln/morpho/opening/essential.hh: Fix includes.

14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
2009-03-03  Guillaume Lazzara  <lazzara@lrde.epita.fr>

	Small fixes related to morpho.

	* mln/morpho/closing/area.hh: update copyright.

	* mln/morpho/closing/leveling.hh: fix guard and revamp.

	* mln/morpho/rank_filter.hh: update forward declaration.

	* tests/morpho/Makefile.am: run tests in morpho/closing and
	morpho/opening.

	* tests/morpho/closing/area.cc,
	* tests/morpho/closing/height.cc,
	* tests/morpho/closing/sum.cc,
	* tests/morpho/closing/volume.cc,
	* tests/morpho/opening/area.cc,
	* tests/morpho/opening/height.cc,
	* tests/morpho/opening/sum.cc,
	* tests/morpho/opening/volume.cc: use tiny.ppm instead of lena.ppm, it
	is faster.

37
38
39
40
41
42
43
44
45
46
2009-03-03  Guillaume Lazzara  <lazzara@lrde.epita.fr>

	Add a specialization of level::convert.

	* mln/level/convert.hh: Add a specialization while the conversion
	value type is equal to the image value type.

	* tests/level/convert.cc: add a new test.

2009-03-03  Guillaume Lazzara  <lazzara@lrde.epita.fr>
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71

	Introduce distance_and_closest_point_geodesic.

	* mln/transform/closest_point_geodesic.hh: rename as...
	* mln/transform/distance_and_closest_point_geodesic.hh: ... this.
	  Now returns both dmap and closest point images.
	  Add a version returning a closest point image containing indexes.
	
	* mln/transform/all.hh: update includes.

	* mln/transform/internal/closest_point_functor.hh: add a new functor
	which build a closest point image containing sites.

	* tests/Makefile.am: run transform tests.

	* tests/transform/Makefile.am: update test names
	.
	* tests/transform/bench_closest_point_geodesic.cc: fix missing
	include.

	* tests/transform/closest_point_geodesic.cc: rename as...
	* tests/transform/distance_and_closest_point_geodesic.cc: ... this.
	  Update according modifications in
	  distance_and_closest_point_geodesic.hh.

72
2009-03-03  Guillaume Lazzara  <lazzara@lrde.epita.fr>
Guillaume Lazzara's avatar
Guillaume Lazzara committed
73
74
75
76
77
78
79
80

	Add util::couple.

	* mln/util/couple.hh: New. behaves like a std::pair.

	* mln/util/all.hh,
	* mln/util/essential.hh: include new header.

81
2009-03-03  Guillaume Lazzara  <lazzara@lrde.epita.fr>
82
83
84

	configure.ac: configure milena/tests/transform.

85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
2009-03-03  Thierry Geraud  <thierry.geraud@lrde.epita.fr>

	Fix missing tests in morpho.

	* tests/morpho/top_hat.cc: New.
	* tests/morpho/Makefile.am: Update.
	* tests/morpho/closing/area.cc,
	* tests/morpho/closing/height.cc (Copyright): Fix.
	* tests/morpho/closing/structural.cc: New.
	* tests/morpho/closing/Makefile.am: Update.
	* tests/morpho/opening/volume.cc,
	* tests/morpho/opening/area.cc,
	* tests/morpho/opening/height.cc (Copyright): Fix.
	* tests/morpho/opening/structural.cc: New.
	* tests/morpho/opening/Makefile.am: Update.

101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
2009-03-03  Thierry Geraud  <thierry.geraud@lrde.epita.fr>

	Disambiguate morphological structural opening and closing.

	* mln/morpho/closing.hh: Move and rename as...
	* mln/morpho/closing/structural.hh: ...this.
	(closing): Rename as...
	(closing::structural): ...this.
	Layout.
	* mln/morpho/closing/all.hh: Update.

	* mln/morpho/opening.hh: Move and rename as...
	* mln/morpho/opening/structural.hh: ...this.
	(opening): Rename as...
	(opening::structural): ...this.
	Layout.
	* mln/morpho/opening/all.hh: Update.
	* mln/morpho/all.hh: Update.

	* mln/morpho/elementary/closing.hh,
	* mln/morpho/elementary/opening.hh: Layout.

	* mln/morpho/elementary/top_hat.hh: Update doc style.
	Layout.
	(top_hat_white, top_hat_black, top_hat_self_complementary):
	Make calls to elementary closing (resp. opening) explicit.
	* mln/morpho/top_hat.hh: Update doc style.
	(top_hat_white, top_hat_black, top_hat_self_complementary):
	Make calls to structural closing (resp. opening) explicit.

131
132
133
134
135
136
137
2009-03-03  Thierry Geraud  <thierry.geraud@lrde.epita.fr>

	Print dimension in op<<(win::ball).

	* mln/win/ball.hh (print_): Print dimension.
	* tests/win/ball.cc: Inactivate echo.

138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
2009-03-02  Thierry Geraud  <thierry.geraud@lrde.epita.fr>

	Have win::disk2d and win::sphere3d (new) rely on win::ball.

	* mln/win/ball.hh: New.
	(diameter): New method; replace both...
	(disk2d::length): ...this and...
	(ball3d::length): ...this.

	* mln/win/ball3d.hh: Rename as...
	* mln/win/sphere3d.hh: ...this.
	(ball3d): Remove; replace by...
	(sphere3d): ...this new typedef.
	* mln/win/disk2d.hh (disk2d): Remove; replace by...
	(disk2d): ...this new typedef.
	* mln/win/all.hh (Copyright): Fix.
	(include): Update.

	* tests/win/ball.cc: New.
	* tests/win/sphere3d.cc: New.
	* tests/win/disk2d.cc: Remove echo.
	* tests/win/Makefile.am: Update.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
161
162
163
164
165
166
2009-03-02  Guillaume Lazzara  <lazzara@lrde.epita.fr>

	Fix window3d.

	* mln/core/alias/window3d.hh: add slice coordinate..

Guillaume Lazzara's avatar
Guillaume Lazzara committed
167
168
169
170
171
172
173
174
175
176
2009-03-02  Guillaume Lazzara  <lazzara@lrde.epita.fr>

	Add more window aliases.

	* mln/core/alias/neighb3d.hh: add c8_3d.

	* mln/core/alias/window2d.hh: add win_c8p.

	* mln/core/alias/window3d.hh: add win_c4p_3d and win_c8p_3d.

177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
2009-03-02  Guillaume Lazzara  <lazzara@lrde.epita.fr>

	Add missing traces in basic routines in geom/* (ticket #49).

	* mln/geom/bbox.hh,
	* mln/geom/max_col.hh,
	* mln/geom/max_ind.hh,
	* mln/geom/max_row.hh,
	* mln/geom/max_sli.hh,
	* mln/geom/min_col.hh,
	* mln/geom/min_ind.hh,
	* mln/geom/min_row.hh,
	* mln/geom/min_sli.hh,
	* mln/geom/ncols.hh,
	* mln/geom/ninds.hh,
	* mln/geom/nrows.hh,
	* mln/geom/nslis.hh: add missing traces.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
195
196
197
198
199
200
201
202
203
204
205
2009-03-02  Guillaume Lazzara  <lazzara@lrde.epita.fr>

	Cleanup scribo sandbox.

	* sandbox/scribo/Makefile: add new rules.

	* sandbox/scribo/demat.hh: add more documentation.

	* sandbox/scribo/demat31Oct2008.hh,
	* sandbox/scribo/demat_v2.hh: remove.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
2009-03-02  Guillaume Lazzara  <lazzara@lrde.epita.fr>

	Small fixes.

	* headers.mk: update dist headers.

	* mln/canvas/morpho/all.hh: remove non existing included headers.

	* mln/morpho/tree/compute_attribute_image.hh,
	* mln/canvas/morpho/attribute_filter.hh: add missing include.

	* tests/core/image/plain.cc
	* mln/level/compare.hh,
	* mln/core/pixter2d.hh: add more preconditions.

	* mln/io/dicom/load.hh: update doc.

	* mln/morpho/essential.hh,
	* mln/morpho/all.hh,
	* mln/morpho/closing/algebraic.hh: revamp.

	* mln/morpho/closing/all.hh,
	* mln/morpho/closing/essential.hh,
	* mln/morpho/opening/all.hh,
	* mln/morpho/opening/essential.hh: new files.

	* tests/unit_test/unit-tests.mk: update test list.

234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
2009-03-01  Edwin Carlinet  <carlinet@lrde.epita.fr>

	Make area_on_vertices work with new algebraic code [POST-RUSH].
	* mln/morpho/attribute/count_adjacent_vertices.hh,
	* mln/morpho/closing/area_on_vertices.hh,
	* mln/morpho/opening/area_on_vertices.hh:
	  Make area_on_vertices work with new algebraic code, and
	adapt count_adjacent_vertices accumulator as a morpho attribute.

	* mln/morpho/closing_area_on_vertices.hh,
	* mln/morpho/closing_attribute.hh,
	* mln/morpho/opening_area_on_vertices.hh,
	* mln/morpho/opening_attribute.hh:
	  Delete old implementations.

	* tests/morpho/artificial_line_graph_image_wst.cc,
	* tests/morpho/lena_line_graph_image_wst2.cc:
	  Update test files using area_on_vertices.

253
254
255
256
257
258
259
2009-03-01  Edwin Carlinet  <carlinet@lrde.epita.fr>

	[EXO2] Add shell script for exo2.
	* sandbox/theo/rush/exo2/Makefile
	* sandbox/theo/rush/exo2/exo2.cc
	* sandbox/theo/rush/exo2/exo2.sh: Shell script for exo2.

260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
2009-03-01  Edwin Carlinet  <carlinet@lrde.epita.fr>

	Remove algebraic_filter and algebraic_union_find from canvas.
	* mln/canvas/morpho/algebraic_filter.hh,
	* mln/canvas/morpho/algebraic_union_find.hh: Remove.
	Now, use either mln::canvas::morpho::attribute_filter or
	leveling/algebraic filters in mln::morpho.

	* sandbox/edwin/accu.cc,
	* sandbox/edwin/accu_trait.hh,
	* sandbox/edwin/algebraic.hh,
	* sandbox/edwin/algebraic_union_find.hh,
	* sandbox/edwin/card.hh,
	* sandbox/edwin/filtres/connectes/Makefile,
	* sandbox/edwin/filtres/connectes/connected_filter.hh,
	* sandbox/edwin/filtres/connectes/filter.cc,
	* sandbox/edwin/filtres/connectes,
	* sandbox/edwin/filtres,
	* sandbox/edwin/leveling.hh: Remove all files related to
	  filters from my sandbox.

281
282
283
284
285
286
287
288
289
2009-02-28  Edwin Carlinet  <carlinet@lrde.epita.fr>

	Exo2: Perform attribute calculus on trees.
	* sandbox/theo/rush/exo2/Makefile: New.
	* sandbox/theo/rush/exo2/exo2.cc: New.
	* sandbox/theo/rush/exo2/propagate.hh: New.
	* sandbox/theo/rush/exo2: New.
	* sandbox/theo/rush: New.

Edwin Carlinet's avatar
Edwin Carlinet committed
290
291
292
293
294
2009-02-28  Edwin Carlinet  <carlinet@lrde.epita.fr>

	Add sharpness accumulator.
	* morpho/attribute/sharpness.hh: New.

295
296
297
298
299
300
301
302
303
304
305
306
307
2009-02-28  Frederic Bour  <bour@lrde.epita.fr>

	Correct references to mln::morpho::closing_... and opening_...
	* mln/accu/height.hh,
	* mln/accu/volume.hh,
	* mln/morpho/all.hh,
	* mln/morpho/essential.hh: Replace mln::morpho::closing_ by
	  mln::morpho::closing::
	* tests/morpho/Makefile.am: Removed old tests
	* tests/morpho/complex_image_wst.cc,
	* tests/morpho/lena_line_graph_image_wst1.cc,
	* tests/morpho/meyer_wst_long.cc: Correct references.

308
309
310
311
312
313
314
315
316
317
318
319
320
321
2009-02-28  Edwin Carlinet  <carlinet@lrde.epita.fr>

	Add take_as_init specialization to compute_attribute_image.
	* mln/canvas/morpho/attribute_filter.hh,
	* mln/morpho/tree/compute_attribute_image.hh
	Add take_as_init specialization.

	* tests/canvas/morpho/Makefile.am,
	* tests/morpho/Makefile.am:
	Correct Makefile rules.

	* tests/morpho/tree/compute_attribute_image.cc: Test file for
          compute_attribute_image.

322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
2009-02-28  Frederic Bour  <bour@lrde.epita.fr>

	Typos corrections in morpho, tests added and corrected.
	* mln/morpho/attribute/height.hh,
	* mln/morpho/closing/algebraic.hh,
	* mln/morpho/closing/area.hh,
	* mln/morpho/closing/height.hh,
	* mln/morpho/closing/volume.hh,
	* mln/morpho/opening/algebraic.hh,
	* mln/morpho/opening/area.hh,
	* mln/morpho/opening/height.hh,
	* mln/morpho/opening/leveling.hh,
	* mln/morpho/opening/volume.hh:
	Correct typos errors, adjust names.
	* tests/morpho/closing/Makefile.am: Add sum test.
	* tests/morpho/closing/sum.cc: New.
	* tests/morpho/closing/volume.cc: Correct error in function usage.
	* tests/morpho/opening/Makefile.am: Add sum test.
	* tests/morpho/opening/sum.cc: New.

342
343
344
345
346
347
348
349
350
351
352
2009-02-28  Frederic Bour  <bour@lrde.epita.fr>

	Adjusted tests for new opening/closing naming scheme.
	* tests/morpho/closing/area.cc,
	* tests/morpho/closing/height.cc,
	* tests/morpho/closing/volume.cc,
	* tests/morpho/opening/area.cc,
	* tests/morpho/opening/height.cc,
	* tests/morpho/opening/volume.cc: Now use closing and opening
	  namespaces.

353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
2009-02-28  Frederic Bour  <bour@lrde.epita.fr>

	Closing and opening area, volume, height naming change..
	* closing/area.hh: New.
	* closing/height.hh: New.
	* closing/volume.hh: New.
	* closing_area.hh: Remove.
	* closing_height.hh: Remove.
	* closing_volume.hh: Remove.
	* opening/area.hh: New.
	* opening/height.hh: New.
	* opening/volume.hh: New.
	* opening_area.hh: Remove.
	* opening_height.hh: Remove.
	* opening_volume.hh: Remove.

369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
2009-02-28  Edwin Carlinet  <carlinet@lrde.epita.fr>

	Create opening and closing morpho subdir and move opening and.
	* mln/morpho/algebraic_filter.hh: Add precondition and test.
	* mln/morpho/closing/algebraic.hh: New.
	* mln/morpho/closing_algebraic.hh: Remove.
	* mln/morpho/leveling_filter.hh: Add precondition and test.
	* mln/morpho/opening/algebraic.hh: New.
	* mln/morpho/opening_algebraic.hh: Remove.
	* tests/morpho/closing/algebraic.cc: New.
	* tests/morpho/closing/area.cc: New.
	* tests/morpho/closing/height.cc: New.
	* tests/morpho/closing/volume.cc: New.
	* tests/morpho/closing: New.
	* tests/morpho/closing_algebraic.cc: Remove.
	* tests/morpho/closing_area.cc: Remove.
	* tests/morpho/closing_height.cc: Remove.
	* tests/morpho/closing_volume.cc: Remove.
	* tests/morpho/opening/area.cc: New.
	* tests/morpho/opening/height.cc: New.
	* tests/morpho/opening/volume.cc: New.
	* tests/morpho/opening: New.
	* tests/morpho/opening_area.cc: Remove.
	* tests/morpho/opening_height.cc: Remove.
	* tests/morpho/opening_volume.cc: Remove.

395
396
397
398
399
400
401
402
403
404
2009-02-28  Edwin Carlinet  <carlinet@lrde.epita.fr>

	Add height attribute, and implement untake and set_value method.
	* mln/morpho/attribute/height.hh: New.
	* mln/morpho/attribute/sum.hh: Implements untake and set_value
	methods.
	* mln/morpho/attribute/volume.hh: s/level_/cur_level_.
	* tests/morpho/attribute/Makefile.am:
	* tests/morpho/attribute/height.cc: Add height test file.

405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
2009-02-28  Edwin Carlinet  <carlinet@lrde.epita.fr>

	Clean and separate connected (leveling/algebraic) filters.
	* mln/canvas/morpho/attribute_filter.hh: Move
	algebraic/leveling facade from attribute filter and change dispatch.
	* mln/canvas/morpho/connected_filter.hh: Remove.
	* mln/morpho/algebraic_filter.hh: Facade for algebraic filter.
	* mln/morpho/closing: New.
	* mln/morpho/leveling_filter.hh: Facade for leveling filter.
	* mln/morpho/opening: New.
	* sandbox/edwin/tree/propagate.hh
	* sandbox/edwin/tree/tree.cc: Correct some bugs.
	* tests/canvas/morpho/attribute_filter.cc: Test file for
	attribute filters.
	* tests/canvas/morpho/connected_filter.cc: Remove.

Thierry Geraud's avatar
Thierry Geraud committed
421
422
423
424
425
426
2009-02-27  Thierry Geraud  <thierry.geraud@lrde.epita.fr>

	Fix guards.

	* mln/canvas/morpho/internal/find_root.hh: Fix guards.

Fabien Freling's avatar
Fabien Freling committed
427
428
429
430
431
2009-02-27  Fabien Freling  <fabien.freling@lrde.epita.fr>

	Fix dimensions bug.
	* mln/io/dicom/load.hh: Fix dimensions bug.

432
433
434
435
436
437
438
439
2009-02-27 Guillaume Lazzara  <z@lrde.epita.fr>

	Make test::predicate more robust.

	* mln/test/predicate.hh: add predicate_tests() function and call it
	in test::impl::* functions.
	Fix a wrong pixter type.

440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
2009-02-27 Guillaume Lazzara  <z@lrde.epita.fr>

	Small fixes for doc generation.

	* doc/Doxyfile.in: add doc/tutorial/img to IMAGE_PATH.

	* doc/doc.mk: Set the path to doc/tutorial/img in a variable.

	* doc/tutorial/Makefile.am: Add IMG_SRCDIR to to TEXINPUTS.

	* img/small-enlarged.png,
	* img/small.png: move...
	* doc/tutorial/img/small-enlarged.png,
	* doc/tutorial/img/small.png: ... here.

	* doc/tutorial/samples/accu-wrong-instanciation.cc.raw: use a
	different accumulator.

	* doc/tutorial/tools/sample_utils.hh: do not include all io headers.

460
461
462
463
464
465
466
467
468
2009-02-26  Fabien Freling  <fabien.freling@lrde.epita.fr>

	Add int_u12 type and fix DICOM support.
	* mln/convert/from_to.hxx: Convert histo::array into image1d.
	* mln/core/image/image1d.hh: Convert histo::array into image1d.
	* mln/io/all.hh: Add dicom include file.
	* mln/io/dicom/load.hh: Fix load support.
	* mln/value/int_u12.hh: New, implement int_u12 type.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
2009-02-25 Guillaume Lazzara  <z@lrde.epita.fr>

	Small fixes.

	* tests/unit_test/unit-tests.mk,
	* doc/tutorial/figures/figures.mk,
	* doc/tutorial/outputs/outputs.mk,
	* doc/tutorial/samples/samples.mk,
	* headers.mk: include new files in distribution.

	* mln/canvas/morpho/algebraic_filter.hh
	* mln/canvas/morpho/algebraic_union_find.hh: fix wrong call to
	find_root.

	* mln/canvas/morpho/internal/find_root.hh: add missing include.

485
486
487
488
489
2009-02-25  Fabien Freling  <fabien.freling@lrde.epita.fr>

	Fix DICOM implementation: was DCMTK, now is GDCM.
	* mln/io/dicom/load.hh: GDCM version.

490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
2009-02-25 Guillaume Lazzara  <z@lrde.epita.fr>

	Add all.hh and essential.hh in mln/opt.

	* mln/opt/all.hh,
	* mln/opt/essential.hh: new.

2009-02-24 Guillaume Lazzara  <z@lrde.epita.fr>

	Fix step 4 in tutorial.

	* doc/tutorial/figures/tuto4_genericity_and_algorithms-5.ppm,
	* doc/tutorial/figures/tuto4_genericity_and_algorithms-6.ppm,
	* doc/tutorial/figures/tuto4_genericity_and_algorithms-9.ppm: update
	reference file.

	* doc/tutorial/samples/tuto4_genericity_and_algorithms.cc: fix
	threshold function.

	* doc/tutorial/tutorial.tex: include the proper image in step 4.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
2009-02-24 Guillaume Lazzara  <z@lrde.epita.fr>

	Various small fixes.

	* mln/essential/routine.hh
	* mln/canvas/morpho/connected_filter.hh
	* mln/canvas/morpho/all.hh
	* mln/all.hh: add missing includes.

	* mln/canvas/morpho/algebraic_filter.hh,
	* mln/canvas/morpho/algebraic_union_find.hh: move implementation of
	find_root()...
	* mln/canvas/morpho/internal/find_root.hh: ... here.

	* mln/core/image/extension_fun.hh,
	* mln/core/image/extension_ima.hh,
	* mln/core/image/extension_val.hh: remove extended_with() (duplicate
	    core/routine/extend).

	* mln/value/label.hh
	* mln/value/rgb.hh: fix badly closed namespace.

	* tests/registration/registration.cc: fix call to registration.

	* tests/util/Makefile.am,
	* tests/util/set.cc: re-enable this test.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
2009-02-24 Guillaume Lazzara  <z@lrde.epita.fr>

	Update tutorial.

	* doc/tutorial/doxyfile_tuto.local: new doxyfile. Generate only the
	tutorial.

	* doc/tutorial/figures/extend-1.ppm,
	* doc/tutorial/figures/extend-2.ppm,
	* doc/tutorial/figures/extend-3.ppm,
	* doc/tutorial/figures/extend-4.ppm,
	* doc/tutorial/figures/extend-5.ppm,
	* doc/tutorial/outputs/extend.txt: new reference files for the new
	example.

	* doc/tutorial/samples/Makefile.am,
	* doc/tutorial/samples/extend.cc: new example for the tutorial,
	related to the image extension.

	* doc/tutorial/samples/ima2d-rot.cc: use extended_to().

	* doc/tutorial/tools/todoxygen.sh: support keyword subsubsection.

	* doc/tutorial/tutorial.tex: add more details about image extension.

Fabien Freling's avatar
Fabien Freling committed
563
564
565
566
567
2009-02-23  Fabien Freling  <fabien.freling@lrde.epita.fr>

	Add DICOM support.
	* mln/io/dicom/load.hh: DICOM support through GDCM library.

568
569
570
571
572
573
574
575
576
2009-02-23 Guillaume Lazzara  <z@lrde.epita.fr>

	Add a missing test for labeling::mean_values.

	* mln/labeling/mean_values.hh: add a more generic version.

	* tests/labeling/Makefile.am,
	* tests/labeling/mean_values.cc: add missing test.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
2009-02-23 Guillaume Lazzara  <z@lrde.epita.fr>

	Various small fixes.

	* doc/tutorial/samples/win-create-1.cc: fix ref output.

	* doc/tutorial/tutorial.tex: change chapter alias.

	* mln/core/image/extension_val.hh: fix wrong prototype of
	extended_with routine.

	* mln/morpho/elementary/laplacian.hh,
	* mln/debug/println_with_border.spe.hh: update comments.

	* mln/io/dump/load.hh: add missing assertion.

	* mln/registration/all.hh: remove not existing included header.

	* mln/registration/icp.hh: add missing to_vec.

	* mln/transform/internal/closest_point_functor.hh: add missing
	includes.

600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
2009-02-23 Guillaume Lazzara  <z@lrde.epita.fr>

	Do not use mln_VAR in tests.

	* tests/core/routine/extend.cc,
	* tests/extract/blue.cc,
	* tests/extract/green.cc,
	* tests/extract/red.cc,
	* tests/labeling/blobs.cc,
	* tests/morpho/artificial_line_graph_image_wst.cc,
	* tests/morpho/elementary/gradient.cc,
	* tests/morpho/elementary/gradient_external.cc,
	* tests/morpho/elementary/gradient_internal.cc,
	* tests/morpho/elementary/laplacian.cc,
	* tests/morpho/lena_line_graph_image_wst1.cc,
	* tests/morpho/lena_line_graph_image_wst2.cc,
	* tests/morpho/skeleton_constrained.cc,
	* tests/morpho/tree/compute_parent.cc,
	* tests/pw/image.cc: Use the proper type for variables instead of
	mln_VAR.

621
622
623
624
2009-02-23 Guillaume Lazzara  <z@lrde.epita.fr>

	Fix ambiguity in morpho::elementary::gradient dispatch.

625
	* mln/morpho/elementary/gradient.hh: Fix ambiguity with images both
626
627
	fastest and logic.

628
629
630
631
632
633
634
635
636
637
638
639
640
2009-02-23 Guillaume Lazzara  <z@lrde.epita.fr>

	Add new routines to make a 3D image from a list of files.

	* mln/io/pbm/load.hh,
	* mln/io/pgm/load.hh,
	* mln/io/ppm/load.hh: load a list of 2D image files and build a 3D
	image from that.

	* tests/io/pbm/pbm.cc,
	* tests/io/pgm/pgm.cc,
	* tests/io/ppm/ppm.cc: update tests.

641
642
643
644
645
646
647
2009-02-23 Guillaume Lazzara  <z@lrde.epita.fr>

	Add more trace::warning in labeling canvas.

	* mln/canvas/labeling.hh: add new trace::warnings.
	* mln/canvas/blobs: make the message more explicit.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
648
649
650
651
652
653
654
655
2009-02-20 Guillaume Lazzara  <z@lrde.epita.fr>

	Add extended_with routine.

	* mln/core/image/extension_fun.hh,
	* mln/core/image/extension_ima.hh,
	* mln/core/image/extension_val.hh: add extended_with routine.

656
657
658
659
660
661
662
2009-02-20 Guillaume Lazzara  <z@lrde.epita.fr>

	Add implicit conversion from algebra::quat to algebra::vec.

	* mln/algebra/quat.hh: add implicit conversion operator to
	algebra::vec.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
663
664
665
666
667
668
669
670
671
672
673
674
675
2009-02-20 Guillaume Lazzara  <z@lrde.epita.fr>

	Update ICP.

	* mln/registration/icp.hh: store point indexes instead of points in
	closest point image. Remove useless to_vec().

	* mln/registration/registration.hh: remove useless to_vec(). Pass a
	domain to the function to be used to compute the closest point image.

	* mln/transform/internal/closest_point_functor.hh: Store point indexes
	instead of points.

676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
2009-02-20 Guillaume Lazzara  <z@lrde.epita.fr>

	Reorder data in the vector returned by to_vec().

	* mln/core/concept/gdpoint.hh,
	* mln/core/concept/gpoint.hh: make to_vec return a new object.

	* mln/core/dpoint.hh,
	* mln/core/point.hh: make to_vec return a vector of float with
	coordinates ordered as a user would expect, (x,y,z...).

	* mln/fun/x2v/bilinear.hh,
	* mln/fun/x2v/trilinear.hh: get the coordinates in the proper vector
	index.

	* mln/fun/x2x/rotation.hh: normalize the axis.

	* tests/algebra/h_vec.cc,
	* tests/core/alias/dpoint3d.cc,
	* tests/core/alias/point1d.cc: fix tests according these changes.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
697
698
699
700
701
702
703
704
705
706
707
708
709
2009-02-20 Guillaume Lazzara  <z@lrde.epita.fr>

	Revert patch #3397.

	* mln/algebra/quat.hh,
	* mln/core/concept/gpoint.hh,
	* mln/core/point.hh,
	* mln/fun/x2v/bilinear.hh,
	* mln/fun/x2v/trilinear.hh,
	* mln/fun/x2x/rotation.hh,
	* mln/registration/icp.hh: undo changes.


Guillaume Lazzara's avatar
Guillaume Lazzara committed
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
2009-02-20 Guillaume Lazzara  <z@lrde.epita.fr>

	Fix tests.

	* generate_dist_headers.sh: add only .hh and .hxx to headers.mk.

	* headers.mk: update.

	* mln/canvas/morpho/algebraic_filter.hh: fix wrong merge.

	* mln/debug/println_with_border.spe.hh: check the right guards.

	* mln/fun/v2v/rgb_to_hsl.hh: do not include rgb aliases.

	* mln/labeling/fill_holes.hh: use unsigned instead of int. Avoid
	warnings.

	* tests/labeling/compute.cc,
	* mln/morpho/attribute/card.hh
	* mln/morpho/attribute/sum.hh
	* mln/morpho/attribute/volume.hh
	* mln/labeling/mean_values.hh: add missing includes.

	* mln/math/abs.hh: include only int_u.hh.

	* tests/registration/multiscale.cc,
	* mln/registration/multiscale.hh: remove.
	
	* tests/registration/Makefile.am: remove multiscale.cc from test list.

	* mln/value/rgb.hh: fix a recursive inclusion.

	* tests/morpho/watershed/flooding.cc: fix path to test image.

	* tests/registration/registration.cc: fix according update made in
	registration.hh.

	* tests/unit_test/unit-tests.mk: update list.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
2009-02-20 Guillaume Lazzara  <z@lrde.epita.fr>

	Fix doc generation.

	* doc/Doxyfile.in,
	* doc/doc.mk,
	* doc/tutorial/tools/split_sample.sh,
	* doc/tutorial/tutorial.tex: fix typo.

	* doc/tutorial/Makefile.am: use $(srcdir) instead of $(top_srcdir).

	* doc/tutorial/examples/examples.mk,
	* doc/tutorial/figures/figures.mk,
	* doc/tutorial/outputs/outputs.mk,
	* doc/tutorial/samples/samples.mk: update.

	* doc/tutorial/figures/tuto2_first_image-1.pbm: new figure.

	* doc/tutorial/samples/ima2d-3.cc: fix missing include.

769
770
771
772
773
774
2009-02-19 Guillaume Lazzara  <z@lrde.epita.fr>

	Give access to the underlying transformation in fun::x2x:composed.

	* mln/fun/x2x/composed.hh: add getters and rename setters.

775
776
777
778
779
780
781
782
2009-02-19  Thierry Geraud  <thierry.geraud@lrde.epita.fr>

	Add a resolve mechanism for use in meta functions.

	* mln/fun/internal/resolve.hh New.
	* mln/metal/is_a.hh (mlc_is_a__1comma): New macro.
	* mln/trait/solve_binary.hh: Upgrade file doc style.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
2009-02-18 Guillaume Lazzara  <z@lrde.epita.fr>

	Various small fixes.

	* doc/tutorial/Makefile.am: fix wrong include path.

	* mln/canvas/morpho/algebraic_union_find.hh: add missing
	MLN_INCLUDE_ONLY guards.

	* mln/core/clock_neighb.hh: add missing is_valid().

	* mln/labeling/mean_values.hh,
	* mln/fun/v2v/rgb_to_hsl.hh: add missing includes.

	* mln/fun/x2x/rotation.hh: add more comments.

	* mln/io/dump/load.hh: check if the loaded image is valid.

	* mln/labeling/level.hh: Fix warnings.

	* mln/registration/all.hh: update comments.

	* mln/registration/icp2.hh: rename as...
	* mln/registration/icp.hh: ... this.

	* mln/registration/registration.hh: fix wrong call to
	registration_tests.

	* mln/util/graph.hh: add NDEBUG guards.

	* mln/value/rgb.hh: add missing forward declaration.

815
816
817
818
819
820
2009-02-18 Guillaume Lazzara  <z@lrde.epita.fr>

	Add support for 3D images in fun::x2v::bilinear.

	* mln/fun/x2v/bilinear.hh: Add a new specialization for 3d Images.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
2009-02-18 Guillaume Lazzara  <z@lrde.epita.fr>

	Fix fun::x2v::rotation.

	* mln/fun/x2x/rotation.hh:
	    (get_rot_h_mat 3d): fix matrix construction.
	    (rotation(algebra::quat)): update attributes in order to produce a
				       valid inverted rotation. 

	* tests/fun/x2x/rotation.cc: improve test.

2009-02-18 Guillaume Lazzara  <z@lrde.epita.fr>

	Add fun::x2v::trilinear.

	* mln/fun/x2v/trilinear.hh: new file. New interpolation algorithm.

	* mln/fun/x2v/all.hh: include new file.

840
841
842
843
844
845
846
847
848
849
2009-02-18 Guillaume Lazzara  <z@lrde.epita.fr>

	Add aliases for 2D algebra::vec.

	* mln/core/alias/vec2d.hh: new. new aliases for float and double 2d
	vectors.

	* mln/core/alias/all.hh,
	* mln/essential/2d.hh: include the new header.

850
851
852
853
854
855
856
857
858
859
2009-02-18 Guillaume Lazzara  <z@lrde.epita.fr>

	Add aliases for 2D algebra::vec.

	* mln/core/alias/vec2d.hh: new. new aliases for float and double 2d
	vectors.

	* mln/core/alias/all.hh,
	* mln/essential/2d.hh: include the new header.

860
861
862
863
864
865
866
867
2009-02-18  Edwin Carlinet  <carlinet@lrde.epita.fr>

	Fix bugs in connected filters tests and add Makefile rules.
	* mln/canvas/morpho/connected_filter.hh: Fix bugs to avoid
	warning at compile.
	* tests/canvas/morpho/Makefile.am: Add check rule.
	* tests/canvas/morpho/connected_filter.cc: Fix include mistakes.

868
869
870
871
872
873
874
875
876
877
878
879
2009-02-18  Edwin Carlinet  <carlinet@lrde.epita.fr>

	Merge leveling and algebraic filters into connected filter.
	* mln/canvas/morpho/connected_filter.hh: File merging the
	two filters.
	* sandbox/edwin/filtres/connectes/connected_filter.hh: Add
	static tests about accumaltors properties when calling directly
	algebraic and leveling filters. Add leveling and algebraic facade.
	* sandbox/edwin/filtres/connectes/filter.cc: Fix bugs.
	* tests/canvas/morpho/connected_filter.cc: Test file for
	connected filters.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
880
881
882
883
884
885
886
2009-02-16  Guillaume Lazzara  <z@lrde.epita.fr>

	Revamp icp2.hh.

	* registration/icp2.hh: move registration*... 
	* registration/registration.hh: ... here.

887
888
889
890
891
892
893
894
895
896
897
898
899
2009-02-16  Guillaume Lazzara  <z@lrde.epita.fr>

	Fix make::graph and add make::region_adjacency_graph.

	* mln/make/graph.hh: use an adjacency matrix and a neighborhood.

	* mln/make/region_adjacency_graph.hh: make a graph from a watershed
	image.

	* tests/make/Makefile.am,
	* tests/make/graph.cc,
	* tests/make/region_adjacency_graph.cc: add new tests.

Fabien Freling's avatar
Fabien Freling committed
900
901
902
903
904
905
906
2009-02-13  Fabien Freling  <fabien.freling@lrde.epita.fr>

	Add unit test for n_max.hh.
	* mln/labeling/all.hh: Update for n_max.hh
	* tests/labeling/Makefile.am: Update for n_max.cc
	* tests/labeling/n_max.cc: Unit test for n_max().

907
908
909
910
911
912
913
914
915
916
917
2009-02-13  Thierry Geraud  <thierry.geraud@lrde.epita.fr>

	Fix labeling fill holes and add a 3D ball window.

	* mln/labeling/fill_holes.hh: Fix.
	* mln/labeling/all.hh: Update.
	* tests/labeling/fill_holes.cc: New.
	* tests/labeling/Makefile.am: Update.
	* mln/win/ball3d.hh: New.
	* mln/win/all.hh: Update.

918
919
920
921
922
2009-02-13  Fabien Freling  <fabien.freling@lrde.epita.fr>

	Add n_max() function to compute n maxima in an array.
	* mln/labeling/n_max.hh: Implement the n_max() function.

Guillaume Lazzara's avatar
Guillaume Lazzara committed
923
924
925
926
927
928
929
2009-02-12  Guillaume Lazzara  <z@lrde.epita.fr>

	Add more doc to ICP.

	* mln/registration/icp2.hh: add more comments and rename
	registraction::icp# as registration::registration#.

930
931
932
933
934
935
936
937
938
939
940
941
942
2009-02-13  Thierry Geraud  <thierry.geraud@lrde.epita.fr>

	Add the morphological sum attribute.

	* mln/morpho/attribute/sum.hh: New.
	* mln/morpho/attribute/volume.hh (area): New .
	* mln/morpho/attribute/card.hh: Layout.
	(take_as_init): New overload for util::pix.
	* mln/morpho/attribute/all.hh: Update.
	* tests/morpho/attribute/sum.cc: New.
	* tests/morpho/attribute/volume.cc: New.
	* tests/morpho/attribute/Makefile.am: Update.

943
944
945
946
947
948
949
950
951
952
953
2009-02-13  Thierry Geraud  <thierry.geraud@lrde.epita.fr>

	Add a label wrapper in fun::l2l.

	* mln/fun/l2l/wrap.hh: New.
	* mln/fun/l2l/all.hh: Update.
	* tests/fun/l2l: New directory.
	* tests/fun/Makefile.am: Update.
	* tests/fun/l2l/wrap.cc: New.
	* tests/fun/l2l/Makefile.am: New.

954
955
956
957
958
2009-02-12  Fabien Freling  <fabien.freling@lrde.epita.fr>

	Add fill_holes() function in new file.
	* mln/labeling/fill_holes.hh: Implement fill_holes().

959
960
961
962
963
964
965
966
967
968
969
970
971
2009-02-12  Guillaume Lazzara  <z@lrde.epita.fr>

	Add new routines to extract HSL components.

	* mln/extract/all.hh: include new includes.

	* mln/extract/hue.hh,
	* mln/extract/lum.hh,
	* mln/extract/sat.hh: new. Construct a fun_image from a hsl image and
	the appropriate meta function.

	* mln/extract/blue.hh: fix a wrong guard.

972
973
974
975
976
977
978
979
980
981
982
983
984
985
2009-02-12  Guillaume Lazzara  <z@lrde.epita.fr>

	Add new meta functions to retrieve HSL components.

	* mln/fun/all.hh: include meta/all.hh.

	* mln/fun/meta/all.hh: new. Includes meta/*.hh.

	* mln/fun/meta/hue.hh: add new specialization for value::hsl.

	* mln/fun/meta/lum.hh,
	* mln/fun/meta/sat.hh: new. Introduce new meta functions to retrieve
	HSL components.

986
987
988
989
990
991
992
993
994
2009-02-12  Guillaume Lazzara  <z@lrde.epita.fr>

	Fix from_to overloads and add missing operators in value::hsl.

	* mln/convert/from_to.hxx: Update forward declarations to from_to
				   overloads.

	* mln/value/hsl.hh: Add missing operators +,-,/,*.

995
996
997
998
999
1000
2009-02-11  Roland Levillain  <roland@lrde.epita.fr>

	Update apps/statues/ to catch up with recent changes of interface.

	* apps/statues/mesh-complex-max-curv-segm.cc,
	* apps/statues/mesh-complex-max-curv.cc, 
For faster browsing, not all history is shown. View entire blame